Hi Jarred,
I started reading this as a moderator as most threads are followed. This one has plenty of BB helpers with experience offering suggestions. First, Richard's comments on correct curve for the distributor, is correct and critical to proper function.
I have not seen enough photos of the balance link assembly, but know the alterations are odd, and will lead you to many problems. There are TWO basic types of balance links between Webers, and the old style and current style have different centers of rotation, and you cannot use the new paddle link with the old "U" link and vice versa. BOTH halves muct come from the same version of the link. I'll try to post photos of both styles below.
Rather than comment on all the issues others have discussed, I would be happy to help you out if you send me a PM with your e-mail address. In that way I can ask critical questions, and cut-to-the-chase. To run through every issue that might be required to make your Webers function correctly on your engine could run into a short book! We don't want to do that here, as I've too many jobs waiting.
Photo 1 is a pair of older Italian Webers with the original style balance linkage. Photo 2 is that same style linkage from another pair of Webers. Photo 3 is the NEW style linkage (heavier with longer center of rotation) on a restored set of race Webers. Do NOT mix and match these two balance link styles!