Well, I would say that if you started w/o the rattle and vibration, replaced components and now have it - you did something wrong (or
didn't do something). If you
started w/ the rattle and vibration, replaced components and the problem remains - you missed something, or driveshaft is bent, out of balance, or out of alignment.
Suffice to say, one should follow the Shop Manual steps in marking, removing, re-assembly, run-up, and tighten down. (Greg's article is excellent as well).
Rather than scratch my head and replace things in hope, I'm taking my driveshaft to get professionally balanced. (hopefully it isn't bent

).